PhyloPlots.jl

PhyloPlots is a Julia package to plot phylogenetic trees and networks.

PhyloNetworks objects can be displayed through R via RCall.

manual outline

• Installation
• Getting started
• Untangling the network
• Better edges
• • Different hybrid edge styles
  • Using edge lengths
  • Varying edge widths
• Adding data
• • Adding labels
  • Adding other annotations using R
  • Side clade bars example

library outline

• public documentation
• internal documentation

functions

• PhyloPlots.plot
• PhyloPlots.plot
• RCall.sexp
• PhyloPlots.check_nodedataframe
• PhyloPlots.edgenode_coordinates
• PhyloPlots.prepare_edgedataframe
• PhyloPlots.prepare_nodedataframe
• PhyloPlots.rexport